HL_4WQF_120

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4WQF|1|CA|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQF_120 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0957

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

4WQF|1|CA|G|327
4WQF|1|CA|U|328
4WQF|1|CA|G|329
4WQF|1|CA|A|330
4WQF|1|CA|A|331
4WQF|1|CA|A|332
4WQF|1|CA|G|333
4WQF|1|CA|C|334
4WQF|1|CA|C|335

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CF

50S ribosomal protein L4

Chain CY

50S ribosomal protein L24