HL_4WQF_216
3D structure
- PDB id
- 4WQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WQF_216 not in the Motif Atlas
- Homologous match to HL_6CFJ_108
- Geometric discrepancy: 0.1314
- The information below is about HL_6CFJ_108
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
4WQF|1|DW|G|53
4WQF|1|DW|5MU|54
4WQF|1|DW|PSU|55
4WQF|1|DW|C|56
4WQF|1|DW|G|57
4WQF|1|DW|A|58
4WQF|1|DW|U|59
4WQF|1|DW|U|60
4WQF|1|DW|C|61
Current chains
- Chain DW
- P-site tRNA
Nearby chains
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
- Chain CG
- 50S ribosomal protein L5
- Chain CQ
- 50S ribosomal protein L16
Coloring options: