HL_4WQR_052

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4WQR|1|14|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQR_052 not in the Motif Atlas

Geometric match to HL_4V9F_045

Geometric discrepancy: 0.3514

The information below is about HL_4V9F_045

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4WQR|1|14|C|641
4WQR|1|14|G|642
4WQR|1|14|A|643
4WQR|1|14|A|644
4WQR|1|14|C|645
4WQR|1|14|A|646
4WQR|1|14|G|647

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain K5

50S ribosomal protein L33

Chain M5

50S ribosomal protein L35