HL_4WQR_100

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

4WQR|1|14|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQR_100 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0607

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4WQR|1|14|G|2819
4WQR|1|14|A|2820
4WQR|1|14|A|2821
4WQR|1|14|G|2822
4WQR|1|14|A|2823
4WQR|1|14|C|2824
4WQR|1|14|C|2825
4WQR|1|14|A|2826
4WQR|1|14|C|2827

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain 55

50S ribosomal protein L17

Chain 75

50S ribosomal protein L19