HL_4WQR_111

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQR_111 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1061

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4WQR|1|1G|C|320
4WQR|1|1G|A|321
4WQR|1|1G|C|322
4WQR|1|1G|U|323
4WQR|1|1G|G|324
4WQR|1|1G|A|325
4WQR|1|1G|G|326
4WQR|1|1G|A|327
4WQR|1|1G|C|328
4WQR|1|1G|A|329
4WQR|1|1G|C|330
4WQR|1|1G|G|331
4WQR|1|1G|G|332
4WQR|1|1G|G|333

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 7A

30S ribosomal protein S16

Chain BA

30S ribosomal protein S20