HL_4WQR_121

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

4WQR|1|1G|U|841, 4WQR|1|1G|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQR_121 not in the Motif Atlas

Homologous match to HL_5J7L_018

Geometric discrepancy: 0.3804

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

4WQR|1|1G|G|837
4WQR|1|1G|G|838
4WQR|1|1G|U|841
4WQR|1|1G|C|842
4WQR|1|1G|U|843
4WQR|1|1G|C|848
4WQR|1|1G|C|849

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S2

Chain 9A

30S ribosomal protein S18