HL_4WQR_140

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUUUUUG

Length

7 nucleotides

Bulged bases

4WQR|1|1H|U|163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQR_140 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2243

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

4WQR|1|1H|C|155
4WQR|1|1H|U|161
4WQR|1|1H|U|162
4WQR|1|1H|U|163
4WQR|1|1H|U|164
4WQR|1|1H|U|165
4WQR|1|1H|G|171

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain J8

50S ribosomal protein L28