HL_4WQR_232

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGGAUGACC

Length

9 nucleotides

Bulged bases

4WQR|1|14|G|1176, 4WQR|1|14|A|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQR_232 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.284

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4WQR|1|14|G|1170
4WQR|1|14|G|1171
4WQR|1|14|G|1173
4WQR|1|14|A|1174
4WQR|1|14|U|1175
4WQR|1|14|G|1176
4WQR|1|14|A|1177
4WQR|1|14|C|1178
4WQR|1|14|C|1179

Current chains

Chain 14

23S ribosomal RNA

Nearby chains