HL_4WQU_012

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

4WQU|1|AA|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_012 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0605

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4WQU|1|AA|G|409
4WQU|1|AA|U|410
4WQU|1|AA|U|411
4WQU|1|AA|C|412
4WQU|1|AA|G|413
4WQU|1|AA|U|414
4WQU|1|AA|G|415
4WQU|1|AA|G|416
4WQU|1|AA|A|417
4WQU|1|AA|G|418
4WQU|1|AA|C|419

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L28

Chain AP

50S ribosomal protein L15