HL_4WQU_025

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

4WQU|1|AA|A|934, 4WQU|1|AA|C|935, 4WQU|1|AA|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_025 not in the Motif Atlas

Geometric match to HL_7RQB_026

Geometric discrepancy: 0.3363

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

4WQU|1|AA|C|931
4WQU|1|AA|C|932
4WQU|1|AA|C|933
4WQU|1|AA|A|934
4WQU|1|AA|C|935
4WQU|1|AA|C|936
4WQU|1|AA|A|937
4WQU|1|AA|G|938

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain BM

30S ribosomal protein S13