HL_4WQU_035

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4WQU|1|AA|U|1442, 4WQU|1|AA|U|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_035 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.052

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4WQU|1|AA|G|1435
4WQU|1|AA|U|1436
4WQU|1|AA|U|1437
4WQU|1|AA|A|1438
4WQU|1|AA|A|1439
4WQU|1|AA|U|1440
4WQU|1|AA|A|1441
4WQU|1|AA|U|1442
4WQU|1|AA|U|1443
4WQU|1|AA|C|1444

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AX

50S ribosomal protein L23