HL_4WQU_039

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4WQU|1|AA|A|1660, 4WQU|1|AA|A|1662, 4WQU|1|AA|A|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_039 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.068

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4WQU|1|AA|C|1658
4WQU|1|AA|G|1659
4WQU|1|AA|A|1660
4WQU|1|AA|C|1661
4WQU|1|AA|A|1662
4WQU|1|AA|C|1663
4WQU|1|AA|A|1664
4WQU|1|AA|G|1665

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L34

Chain AW

50S ribosomal protein L22