HL_4WQU_058

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_058 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.042

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

4WQU|1|AA|C|2416
4WQU|1|AA|G|2417
4WQU|1|AA|U|2418
4WQU|1|AA|G|2419
4WQU|1|AA|U|2420
4WQU|1|AA|G|2421
4WQU|1|AA|G|2422
4WQU|1|AA|A|2423
4WQU|1|AA|A|2424
4WQU|1|AA|G|2425

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L28

Chain AP

50S ribosomal protein L15