HL_4WQU_059

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_059 not in the Motif Atlas

Homologous match to HL_7RQB_060

Geometric discrepancy: 0.1293

The information below is about HL_7RQB_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4WQU|1|AA|C|2483
4WQU|1|AA|G|2484
4WQU|1|AA|U|2485
4WQU|1|AA|C|2486
4WQU|1|AA|C|2487
4WQU|1|AA|A|2488
4WQU|1|AA|C|2489
4WQU|1|AA|A|2490
4WQU|1|AA|G|2491

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A9

50S ribosomal protein L36

Chain AH

50S ribosomal protein L6

Chain BZ

50S ribosomal protein L9,Elongation factor G