HL_4WQU_106

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAGGGUAG

Length

8 nucleotides

Bulged bases

4WQU|1|BY|G|18, 4WQU|1|BY|G|19, 4WQU|1|BY|U|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_106 not in the Motif Atlas

Homologous match to HL_3WFS_001

Geometric discrepancy: 0.2604

The information below is about HL_3WFS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WQU|1|BY|C|13
4WQU|1|BY|A|14
4WQU|1|BY|G|15
4WQU|1|BY|G|18
4WQU|1|BY|G|19
4WQU|1|BY|U|20
4WQU|1|BY|A|21
4WQU|1|BY|G|22

Current chains

Chain BY

P-site tRNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AC

50S ribosomal protein L1