HL_4WQU_121

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases (A, C, G, U)

386G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_121 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0642

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4WQU|1|CA|G|382
4WQU|1|CA|U|383
4WQU|1|CA|U|384
4WQU|1|CA|C|385
4WQU|1|CA|G|386
4WQU|1|CA|U|387
4WQU|1|CA|G|388
4WQU|1|CA|G|389
4WQU|1|CA|A|390
4WQU|1|CA|G|391
4WQU|1|CA|C|392

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L28

Chain CP

50S ribosomal protein L15