HL_4WQU_158

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4WQU|1|CA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_158 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0619

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

4WQU|1|CA|G|1949
4WQU|1|CA|G|1950
4WQU|1|CA|U|1951
4WQU|1|CA|A|1952
4WQU|1|CA|A|1953
4WQU|1|CA|G|1954
4WQU|1|CA|U|1955
4WQU|1|CA|U|1956
4WQU|1|CA|C|1957

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CO

50S ribosomal protein L14

Chain DA

Small subunit ribosomal RNA; SSU rRNA