HL_4WQU_162

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4WQU|1|CA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_162 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0583

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WQU|1|CA|C|2248
4WQU|1|CA|U|2249
4WQU|1|CA|G|2250
4WQU|1|CA|G|2251
4WQU|1|CA|G|2252
4WQU|1|CA|G|2253
4WQU|1|CA|C|2254
4WQU|1|CA|G|2255
4WQU|1|CA|G|2256

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C0

50S ribosomal protein L27

Chain CQ

50S ribosomal protein L16

Chain DW

Transfer RNA; tRNA