HL_4WQU_165

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_165 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.0814

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4WQU|1|CA|C|2324
4WQU|1|CA|G|2325
4WQU|1|CA|C|2326
4WQU|1|CA|A|2327
4WQU|1|CA|A|2328
4WQU|1|CA|G|2329
4WQU|1|CA|G|2330
4WQU|1|CA|G|2331

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C0

50S ribosomal protein L27

Chain CG

50S ribosomal protein L5

Chain CQ

50S ribosomal protein L16

Chain DW

Transfer RNA; tRNA