HL_4WQU_188

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_188 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0908

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4WQU|1|DA|C|320
4WQU|1|DA|A|321
4WQU|1|DA|C|322
4WQU|1|DA|U|323
4WQU|1|DA|G|324
4WQU|1|DA|A|325
4WQU|1|DA|G|326
4WQU|1|DA|A|327
4WQU|1|DA|C|328
4WQU|1|DA|A|329
4WQU|1|DA|C|330
4WQU|1|DA|G|331
4WQU|1|DA|G|332
4WQU|1|DA|G|333

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DP

30S ribosomal protein S16

Chain DT

30S ribosomal protein S20