HL_4WQU_228

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGCAAAUCC

Length

9 nucleotides

Bulged bases

4WQU|1|CA|C|1493, 4WQU|1|CA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_228 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.371

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4WQU|1|CA|G|1491
4WQU|1|CA|G|1492
4WQU|1|CA|C|1493
4WQU|1|CA|A|1494
4WQU|1|CA|A|1495
4WQU|1|CA|A|1496
4WQU|1|CA|U|1497
4WQU|1|CA|C|1498
4WQU|1|CA|C|1499

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L2