HL_4WQU_236

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

A(PSU)UGAA(MIA)A(PSU)

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, MIA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_236 not in the Motif Atlas

Homologous match to HL_1B23_004

Geometric discrepancy: 0.4389

The information below is about HL_1B23_004

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.6

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

4WQU|1|DW|A|31
4WQU|1|DW|PSU|32
4WQU|1|DW|U|33
4WQU|1|DW|G|34
4WQU|1|DW|A|35
4WQU|1|DW|A|36
4WQU|1|DW|MIA|37
4WQU|1|DW|A|38
4WQU|1|DW|PSU|39

Current chains

Chain DW

P-site tRNA

Nearby chains

Chain DA

Small subunit ribosomal RNA; SSU rRNA

Chain DI

30S ribosomal protein S9

Chain DV

mRNA

Chain DY

Transfer RNA; tRNA