HL_4WRA_068

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4WRA|1|14|U|1396, 4WRA|1|14|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WRA_068 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.094

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4WRA|1|14|G|1389
4WRA|1|14|U|1390
4WRA|1|14|U|1391
4WRA|1|14|A|1392
4WRA|1|14|A|1393
4WRA|1|14|U|1394
4WRA|1|14|A|1395
4WRA|1|14|U|1396
4WRA|1|14|U|1397
4WRA|1|14|C|1398

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23