HL_4WRA_093

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

4WRA|1|14|A|2476, 4WRA|1|14|C|2477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WRA_093 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3976

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4WRA|1|14|C|2471
4WRA|1|14|G|2472
4WRA|1|14|U|2473
4WRA|1|14|C|2474
4WRA|1|14|C|2475
4WRA|1|14|A|2476
4WRA|1|14|C|2477
4WRA|1|14|A|2478
4WRA|1|14|G|2479

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1L

Transfer RNA; tRNA