HL_4WRA_194

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WRA_194 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.0906

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4WRA|1|1H|C|2324
4WRA|1|1H|G|2325
4WRA|1|1H|C|2326
4WRA|1|1H|A|2327
4WRA|1|1H|A|2328
4WRA|1|1H|G|2329
4WRA|1|1H|G|2330
4WRA|1|1H|G|2331

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 2K

Transfer RNA; tRNA

Chain 41

50S ribosomal protein L5

Chain 88

50S ribosomal protein L16

Chain I8

50S ribosomal protein L27