HL_4WRA_253
3D structure
- PDB id
- 4WRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.05 Å
Loop
- Sequence
- ACU(QUO)UA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: QUO, MIA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WRA_253 not in the Motif Atlas
- Homologous match to HL_5E81_235
- Geometric discrepancy: 0.1464
- The information below is about HL_5E81_235
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
4WRA|1|1K|A|32
4WRA|1|1K|C|33
4WRA|1|1K|U|34
4WRA|1|1K|QUO|35
4WRA|1|1K|U|36
4WRA|1|1K|A|37
4WRA|1|1K|MIA|38
4WRA|1|1K|A|39
4WRA|1|1K|PSU|40
Current chains
- Chain 1K
- tRNA-Tyr
Nearby chains
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3I
- 30S ribosomal protein S12
- Chain 4K
- mRNA
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