HL_4WRA_262

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WRA_262 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.2972

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4WRA|1|14|G|2304
4WRA|1|14|A|2305
4WRA|1|14|C|2306
4WRA|1|14|G|2307
4WRA|1|14|G|2308
4WRA|1|14|A|2309
4WRA|1|14|A|2310
4WRA|1|14|A|2311
4WRA|1|14|U|2312

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 49

50S ribosomal protein L5