3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CGAAGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4WSD_016 not in the Motif Atlas
Homologous match to HL_4LFB_016
Geometric discrepancy: 0.101
The information below is about HL_4LFB_016
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

4WSD|1|13|C|726
4WSD|1|13|G|727
4WSD|1|13|A|728
4WSD|1|13|A|729
4WSD|1|13|G|730
4WSD|1|13|G|731

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 6I
30S ribosomal protein S15

Coloring options:


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