HL_4WSD_025

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

4WSD|1|13|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_025 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.2334

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|13|G|1134
4WSD|1|13|U|1135
4WSD|1|13|U|1136
4WSD|1|13|C|1137
4WSD|1|13|G|1138
4WSD|1|13|G|1139
4WSD|1|13|C|1140

Current chains

Chain 13

16S ribosomal RNA

Nearby chains