HL_4WSD_044

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

4WSD|1|14|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_044 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0652

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4WSD|1|14|G|382
4WSD|1|14|U|383
4WSD|1|14|U|384
4WSD|1|14|C|385
4WSD|1|14|G|386
4WSD|1|14|U|387
4WSD|1|14|G|388
4WSD|1|14|G|389
4WSD|1|14|A|390
4WSD|1|14|G|391
4WSD|1|14|C|392

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain F5

50S ribosomal protein L28