HL_4WSD_058

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGGGGCCCACCAGCCUACC

Length

19 nucleotides

Bulged bases

4WSD|1|14|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|14|G|879
4WSD|1|14|G|880
4WSD|1|14|G|881
4WSD|1|14|G|882
4WSD|1|14|G|883
4WSD|1|14|C|884
4WSD|1|14|C|885
4WSD|1|14|C|886
4WSD|1|14|A|887
4WSD|1|14|C|888
4WSD|1|14|C|889
4WSD|1|14|A|890
4WSD|1|14|G|892
4WSD|1|14|C|893
4WSD|1|14|C|894
4WSD|1|14|U|895
4WSD|1|14|A|896
4WSD|1|14|C|897
4WSD|1|14|C|898

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1L

Transfer RNA; tRNA

Chain 45

50S ribosomal protein L16

Chain 4A

30S ribosomal protein S13

Chain D5

50S ribosomal protein L25