HL_4WSD_093

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4WSD|1|14|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_093 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.076

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

4WSD|1|14|C|2404
4WSD|1|14|G|2405
4WSD|1|14|U|2406
4WSD|1|14|G|2407
4WSD|1|14|U|2408
4WSD|1|14|G|2409
4WSD|1|14|G|2410
4WSD|1|14|A|2411
4WSD|1|14|A|2412
4WSD|1|14|G|2413

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain F5

50S ribosomal protein L28