HL_4WSD_094

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

4WSD|1|14|A|2476, 4WSD|1|14|C|2477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_094 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3192

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4WSD|1|14|C|2471
4WSD|1|14|G|2472
4WSD|1|14|U|2473
4WSD|1|14|C|2474
4WSD|1|14|C|2475
4WSD|1|14|A|2476
4WSD|1|14|C|2477
4WSD|1|14|A|2478
4WSD|1|14|G|2479

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1L

Transfer RNA; tRNA