HL_4WSD_115

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4WSD|1|1G|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_115 not in the Motif Atlas

Homologous match to HL_6CZR_082

Geometric discrepancy: 0.4507

The information below is about HL_6CZR_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.1

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

4WSD|1|1G|C|419
4WSD|1|1G|U|420
4WSD|1|1G|U|421
4WSD|1|1G|C|422
4WSD|1|1G|G|423
4WSD|1|1G|G|424

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 22

30S ribosomal protein S3

Chain 32

30S ribosomal protein S4