HL_4WSD_116
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CCGACGAGG
- Length
- 9 nucleotides
- Bulged bases
- 4WSD|1|1G|C|466
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WSD_116 not in the Motif Atlas
- Geometric match to HL_3RG5_006
- Geometric discrepancy: 0.3976
- The information below is about HL_3RG5_006
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- tRNA anticodon loop
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
4WSD|1|1G|C|457
4WSD|1|1G|C|458
4WSD|1|1G|G|464
4WSD|1|1G|A|465
4WSD|1|1G|C|466
4WSD|1|1G|G|467
4WSD|1|1G|A|468
4WSD|1|1G|G|474
4WSD|1|1G|G|475
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 7A
- 30S ribosomal protein S16
Coloring options: