HL_4WSD_127

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCCGCGAGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_127 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2552

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4WSD|1|1G|C|1028
4WSD|1|1G|C|1028|||A
4WSD|1|1G|C|1028|||B
4WSD|1|1G|G|1029
4WSD|1|1G|C|1030
4WSD|1|1G|G|1031
4WSD|1|1G|A|1032
4WSD|1|1G|G|1032|||A
4WSD|1|1G|G|1032|||B
4WSD|1|1G|G|1033

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains