HL_4WSD_166

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4WSD|1|1H|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_166 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.4007

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4WSD|1|1H|C|1064
4WSD|1|1H|U|1065
4WSD|1|1H|U|1066
4WSD|1|1H|A|1067
4WSD|1|1H|G|1068
4WSD|1|1H|A|1069
4WSD|1|1H|A|1070
4WSD|1|1H|G|1071
4WSD|1|1H|C|1072
4WSD|1|1H|A|1073
4WSD|1|1H|G|1074

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains