HL_4WSD_174

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

4WSD|1|1H|U|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_174 not in the Motif Atlas

Geometric match to HL_7RQB_037

Geometric discrepancy: 0.09

The information below is about HL_7RQB_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32426.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4WSD|1|1H|C|1451
4WSD|1|1H|A|1453
4WSD|1|1H|U|1454
4WSD|1|1H|G|1455
4WSD|1|1H|G|1456
4WSD|1|1H|A|1457
4WSD|1|1H|C|1458
4WSD|1|1H|G|1459

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 98

50S ribosomal protein L17