HL_4WSD_226
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- A(PSU)UGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- 4WSD|1|3L|G|34
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WSD_226 not in the Motif Atlas
- Homologous match to HL_6PMO_004
- Geometric discrepancy: 0.2822
- The information below is about HL_6PMO_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4WSD|1|3L|A|31
4WSD|1|3L|PSU|32
4WSD|1|3L|U|33
4WSD|1|3L|G|34
4WSD|1|3L|A|35
4WSD|1|3L|A|36
4WSD|1|3L|A|37
4WSD|1|3L|A|38
4WSD|1|3L|U|39
Current chains
- Chain 3L
- tRNA-Phe
Nearby chains
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2A
- 30S ribosomal protein S11
- Chain 2L
- Transfer RNA; tRNA
- Chain 4L
- mRNA
- Chain 62
- 30S ribosomal protein S7
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