HL_4WSD_227
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WSD_227 not in the Motif Atlas
- Homologous match to HL_1U0B_003
- Geometric discrepancy: 0.3391
- The information below is about HL_1U0B_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
4WSD|1|3L|G|53
4WSD|1|3L|5MU|54
4WSD|1|3L|PSU|55
4WSD|1|3L|C|56
4WSD|1|3L|G|57
4WSD|1|3L|A|58
4WSD|1|3L|U|59
4WSD|1|3L|U|60
4WSD|1|3L|C|61
Current chains
- Chain 3L
- tRNA-Phe
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: