HL_4WSD_240

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCCGCGAGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_240 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3067

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4WSD|1|1H|G|2854
4WSD|1|1H|C|2855
4WSD|1|1H|C|2856
4WSD|1|1H|G|2857
4WSD|1|1H|C|2858
4WSD|1|1H|G|2859
4WSD|1|1H|A|2860
4WSD|1|1H|G|2861
4WSD|1|1H|G|2862
4WSD|1|1H|C|2863

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain B8

50S ribosomal protein L19