HL_4WSM_008

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSM_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1191

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4WSM|1|13|C|320
4WSM|1|13|A|321
4WSM|1|13|C|322
4WSM|1|13|U|323
4WSM|1|13|G|324
4WSM|1|13|A|325
4WSM|1|13|G|326
4WSM|1|13|A|327
4WSM|1|13|C|328
4WSM|1|13|A|329
4WSM|1|13|C|330
4WSM|1|13|G|331
4WSM|1|13|G|332
4WSM|1|13|G|333

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7I

30S ribosomal protein S16

Chain BI

30S ribosomal protein S20