HL_4WSM_081

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4WSM|1|14|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSM_081 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.122

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

4WSM|1|14|G|1949
4WSM|1|14|G|1950
4WSM|1|14|U|1951
4WSM|1|14|A|1952
4WSM|1|14|A|1953
4WSM|1|14|G|1954
4WSM|1|14|U|1955
4WSM|1|14|U|1956
4WSM|1|14|C|1957

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 25

50S ribosomal protein L14