HL_4WSM_087

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSM_087 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.1926

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

4WSM|1|14|G|2302
4WSM|1|14|G|2303
4WSM|1|14|G|2304
4WSM|1|14|A|2305
4WSM|1|14|C|2306
4WSM|1|14|G|2307
4WSM|1|14|G|2308
4WSM|1|14|A|2309
4WSM|1|14|A|2310
4WSM|1|14|A|2311
4WSM|1|14|U|2312
4WSM|1|14|C|2313
4WSM|1|14|C|2314

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1J

5S ribosomal RNA; 5S rRNA

Chain 2L

Transfer RNA; tRNA

Chain 49

50S ribosomal protein L5