HL_4WSM_088

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSM_088 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.0584

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4WSM|1|14|C|2324
4WSM|1|14|G|2325
4WSM|1|14|C|2326
4WSM|1|14|A|2327
4WSM|1|14|A|2328
4WSM|1|14|G|2329
4WSM|1|14|G|2330
4WSM|1|14|G|2331

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 2L

Transfer RNA; tRNA

Chain 45

50S ribosomal protein L16

Chain E5

50S ribosomal protein L27