HL_4WSM_125

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCCGCGAGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSM_125 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3085

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4WSM|1|1G|C|1028
4WSM|1|1G|C|1028|||A
4WSM|1|1G|C|1028|||B
4WSM|1|1G|G|1029
4WSM|1|1G|C|1030
4WSM|1|1G|G|1031
4WSM|1|1G|A|1032
4WSM|1|1G|G|1032|||A
4WSM|1|1G|G|1032|||B
4WSM|1|1G|G|1033

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains