HL_4WSM_195

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4WSM|1|1H|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSM_195 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0656

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

4WSM|1|1H|C|2404
4WSM|1|1H|G|2405
4WSM|1|1H|U|2406
4WSM|1|1H|G|2407
4WSM|1|1H|U|2408
4WSM|1|1H|G|2409
4WSM|1|1H|G|2410
4WSM|1|1H|A|2411
4WSM|1|1H|A|2412
4WSM|1|1H|G|2413

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 78

50S ribosomal protein L15

Chain J8

50S ribosomal protein L28