HL_4WSM_196

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

4WSM|1|1H|A|2476, 4WSM|1|1H|C|2477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSM_196 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.2739

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4WSM|1|1H|C|2471
4WSM|1|1H|G|2472
4WSM|1|1H|U|2473
4WSM|1|1H|C|2474
4WSM|1|1H|C|2475
4WSM|1|1H|A|2476
4WSM|1|1H|C|2477
4WSM|1|1H|A|2478
4WSM|1|1H|G|2479

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 1K

Transfer RNA; tRNA

Chain 51

50S ribosomal protein L6

Chain 88

50S ribosomal protein L16