HL_4WSM_212

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAUUGGUAGAC

Length

13 nucleotides

Bulged bases

4WSM|1|1L|U|17, 4WSM|1|1L|U|20, 4WSM|1|1L|G|22

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSM_212 not in the Motif Atlas

Homologous match to HL_1SER_001

Geometric discrepancy: 0.4007

The information below is about HL_1SER_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.3

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

4WSM|1|1L|G|12
4WSM|1|1L|G|13
4WSM|1|1L|A|14
4WSM|1|1L|A|15
4WSM|1|1L|U|16
4WSM|1|1L|U|17
4WSM|1|1L|G|18
4WSM|1|1L|G|19
4WSM|1|1L|U|20
4WSM|1|1L|A|21
4WSM|1|1L|G|22
4WSM|1|1L|A|23
4WSM|1|1L|C|24

Current chains

Chain 1L

tRNA-Leu

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 2L

Transfer RNA; tRNA