HL_4WSM_216

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUGAG(1MG)(PSU)G

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSM_216 not in the Motif Atlas

Homologous match to HL_6UFG_007

Geometric discrepancy: 0.2492

The information below is about HL_6UFG_007

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.6

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

4WSM|1|2K|C|32
4WSM|1|2K|U|33
4WSM|1|2K|U|34
4WSM|1|2K|G|35
4WSM|1|2K|A|36
4WSM|1|2K|G|37
4WSM|1|2K|1MG|38
4WSM|1|2K|PSU|39
4WSM|1|2K|G|40

Current chains

Chain 2K

tRNA-Leu

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3K

Transfer RNA; tRNA

Chain 4K

mRNA

Chain 8E

30S ribosomal protein S9